// Copyright (c) 2009 INRIA Sophia-Antipolis (France).
// All rights reserved.
//
// This file is part of CGAL (www.cgal.org).
//
// $URL: https://github.com/CGAL/cgal/blob/v6.2-beta1/Mesh_3/include/CGAL/Mesh_3/Labeled_mesh_domain_3_implicit_function.h $
// $Id: include/CGAL/Mesh_3/Labeled_mesh_domain_3_implicit_function.h 431cfb5357d $
// SPDX-License-Identifier: GPL-3.0-or-later OR LicenseRef-Commercial
//
// Author(s)     : Stéphane Tayeb, Aymeric PELLE


#ifndef CGAL_LABELED_MESH_DOMAIN_3_IMPLICIT_FUNCTION_H
#define CGAL_LABELED_MESH_DOMAIN_3_IMPLICIT_FUNCTION_H

#include <CGAL/license/Mesh_3.h>

#include <CGAL/disable_warnings.h>

#include <CGAL/Mesh_3/config.h>

#include <CGAL/Bbox_3.h>
#include <CGAL/point_generators_3.h>
#include <memory>
#include <CGAL/tuple.h>
#include <CGAL/Origin.h>

#include <functional>
#include <type_traits>

#include <CGAL/SMDS_3/internal/Handle_IO_for_pair_of_int.h>
#include <CGAL/SMDS_3/internal/indices_management.h>

// support for implicit functions
#include <CGAL/Implicit_to_labeling_function_wrapper.h>
#include <CGAL/Named_function_parameters.h>
#ifdef CGAL_MESH_3_VERBOSE
#  include <boost/format.hpp>
#endif
#include <optional>

#include <CGAL/Mesh_3/Null_subdomain_index.h>
#include <CGAL/Mesh_domain_with_polyline_features_3.h>

namespace CGAL {

class Image_3;

namespace Mesh_3 {
namespace internal {

  struct Identity {
    template <typename T>
    const T& operator()(const T& x) { return x; }
  };

  template<typename T>
  struct Greater_than {
    typedef T argument_type;
    typedef bool result_type;
    Greater_than(const T& second) : second(second) {}
    bool operator()(const T& first) const {
      return std::greater<T>()(first, second);
    }
    T second;
  };

  struct Do_not_delete {
    template <typename T> void operator()(T*) const { }
  };

  template <typename Image_values_to_subdom_indices>
  struct Create_gray_image_values_to_subdomain_indices {
    typedef Image_values_to_subdom_indices type;
    template <typename FT>
    type operator()(Image_values_to_subdom_indices functor, const FT&) const {
      return functor;
    }
  };

  // specialization for `Null_functor`: create the default functor
  template <>
  struct Create_gray_image_values_to_subdomain_indices<Null_functor> {
    typedef Mesh_3::internal::Greater_than<double> type;
    template <typename FT>
    type operator()(Null_functor, const FT& iso_value) const {
      return type(iso_value);
    }
  };

  template <typename Image_values_to_subdom_indices>
  struct Create_labeled_image_values_to_subdomain_indices {
    typedef Image_values_to_subdom_indices type;
    type operator()(Image_values_to_subdom_indices functor) const {
      return functor;
    }
  };

  // specialization for `Null_functor`: create the default functor
  template <>
  struct Create_labeled_image_values_to_subdomain_indices<Null_functor> {
    typedef Identity type;
    type operator()(Null_functor) const {
      return type();
    }
  };
} // end namespace CGAL::Mesh_3::internal
} // end namespace CGAL::Mesh_3


template <typename Subdomain_index>
struct Construct_pair_from_subdomain_indices {
  typedef std::pair<Subdomain_index, Subdomain_index> result_type;

  result_type operator()(Subdomain_index a, Subdomain_index b) const {
    return result_type(a, b);
  }
}; // end class template Construct_pair_from_subdomain_indices

namespace details
{

template <typename Geom_traits,
          typename Subdomain_index,
          typename Surface_patch_index_>
class Labeled_mesh_domain_3_impl
{
protected:
  typedef Surface_patch_index_ Surface_patch_index;
  typedef typename Geom_traits::Point_3 Point_3;
  typedef typename Geom_traits::Sphere_3 Sphere_3;
  typedef typename Geom_traits::Iso_cuboid_3 Iso_cuboid_3;
  typedef typename Geom_traits::FT FT;
  typedef std::shared_ptr<CGAL::Random> CGAL_Random_share_ptr_t;
  // Returns squared error bound from `bbox` and `error`
  FT squared_error_bound(const Iso_cuboid_3& bbox, const FT& error) const
  {
    typename Geom_traits::Compute_squared_distance_3 squared_distance =
                             Geom_traits().compute_squared_distance_3_object();
    return squared_distance((bbox.min)(), (bbox.max)())*error*error/4;
  }

  static Iso_cuboid_3 iso_cuboid(const Bbox_3& bbox)
  {
    const Point_3 p_min(bbox.xmin(), bbox.ymin(), bbox.zmin());
    const Point_3 p_max(bbox.xmax(), bbox.ymax(), bbox.zmax());

    return Iso_cuboid_3(p_min,p_max);
  }

  static Iso_cuboid_3 iso_cuboid(const typename Geom_traits::Sphere_3& sphere)
  {
    return iso_cuboid(sphere.bbox());
  }

  static Iso_cuboid_3 iso_cuboid(const typename Geom_traits::Iso_cuboid_3& c)
  {
    return c;
  }

  static Construct_pair_from_subdomain_indices<Subdomain_index>
  construct_pair_functor() {
    return Construct_pair_from_subdomain_indices<Subdomain_index>();
  }

  template <typename Function,
            typename Bounding_object,
            typename Null,
            typename Construct_surface_patch_index>
  Labeled_mesh_domain_3_impl(const Function& f,
                                     const Bounding_object& bounding,
                                     const FT& error_bound,
                                     Construct_surface_patch_index cstr_s_p_i,
                                     Null null,
                                     CGAL::Random* p_rng)
    : function_(f)
    , bbox_(iso_cuboid(bounding))
    , cstr_s_p_index(cstr_s_p_i)
    , null(null)
    , p_rng_(p_rng == 0 ?
             CGAL_Random_share_ptr_t(new CGAL::Random(0)) :
             CGAL_Random_share_ptr_t(p_rng, Mesh_3::internal::Do_not_delete()))
    , squared_error_bound_(squared_error_bound(bbox_,error_bound))
  {}

  Labeled_mesh_domain_3_impl(const Labeled_mesh_domain_3_impl&) = default;

  // The function which answers subdomain queries
  typedef std::function<Subdomain_index(const Point_3&)> Function_type;
  Function_type function_;
  // The bounding box
  const Iso_cuboid_3 bbox_;

  typedef std::function<
    Surface_patch_index(Subdomain_index,
                        Subdomain_index)> Construct_surface_patch_index;
  Construct_surface_patch_index cstr_s_p_index;
  // The functor that decides which sub-domain indices correspond to the
  // outside of the domain.
  typedef std::function<bool(Subdomain_index)> Null;
  Null null;
  // The random number generator used by Construct_initial_points
  CGAL_Random_share_ptr_t p_rng_;
  // Error bound relative to sphere radius
  FT squared_error_bound_;
}; // Labeled_mesh_domain_3_impl

} // namespace details

/*
Documented in Mesh_3/doc/Mesh_3/CGAL/Labeled_mesh_domain_3.h (remove ImageIO dependency)
*/
template<class BGT,
         class Subdomain_index_ = int,
         class Surface_patch_index_ = std::pair<Subdomain_index_,
                                                Subdomain_index_> >
class Labeled_mesh_domain_3
  : protected details::Labeled_mesh_domain_3_impl<BGT,
                                                  Subdomain_index_,
                                                  Surface_patch_index_>
{
public:
  //-------------------------------------------------------
  // Index Types
  //-------------------------------------------------------
  // Type of indexes for cells of the input complex
/// \name Types
///@{
  /// The subdomain index of this model of `MeshDomain_3`
  typedef Subdomain_index_                  Subdomain_index;
  //
  typedef std::optional<Subdomain_index>  Subdomain;

  // Type of indexes for cells of the input complex
  typedef Surface_patch_index_                  Surface_patch_index;
  typedef std::optional<Surface_patch_index>  Surface_patch;

  // Type of indexes to characterize the lowest dimensional face of the input
  // complex on which a vertex lie
  typedef typename CGAL::Mesh_3::internal::
    Index_generator<Subdomain_index, Surface_patch_index>::Index Index;

private:
  typedef details::Labeled_mesh_domain_3_impl<BGT,
                                              Subdomain_index,
                                              Surface_patch_index
                                             > Impl_details;
  typedef typename Impl_details::Null     Null;
  typedef typename Impl_details::Construct_surface_patch_index
                                          Construct_surface_patch_index;
  typedef typename Impl_details::Function_type Function_type;

public:
  // Geometric object types
  typedef typename BGT::Point_3    Point_3;
  typedef typename BGT::Segment_3  Segment_3;
  typedef typename BGT::Ray_3      Ray_3;
  typedef typename BGT::Line_3     Line_3;
  typedef typename BGT::Vector_3   Vector_3;
  typedef typename BGT::Sphere_3   Sphere_3;
  typedef CGAL::Bbox_3             Bbox_3;

protected:
  typedef typename BGT::Iso_cuboid_3 Iso_cuboid_3;

public:
  // Kernel_traits compatibility
  typedef BGT R;
  // access Function type from inherited class
  typedef Function_type Fct;

  typedef std::tuple<Point_3,Index,int> Intersection;


  typedef typename BGT::FT FT;
  typedef BGT Geom_traits;
  using Impl_details::construct_pair_functor;

  Labeled_mesh_domain_3(const Labeled_mesh_domain_3&) = default;

  template<typename Function, typename Bounding_object, typename CGAL_NP_TEMPLATE_PARAMETERS>
  Labeled_mesh_domain_3(const Function& function,
                        const Bounding_object& bounding_object,
                        const CGAL_NP_CLASS& np = parameters::default_values(),
                        typename std::enable_if<!is_named_function_parameter<Function>>::type* = nullptr)
  :Impl_details(function,
                bounding_object,
                parameters::choose_parameter(parameters::get_parameter(np, internal_np::error_bound), FT(1e-3)),
                parameters::choose_parameter(parameters::get_parameter(np, internal_np::surface_patch_index), construct_pair_functor()),
                parameters::choose_parameter(parameters::get_parameter(np, internal_np::null_subdomain_index_param), Null_subdomain_index()),
                parameters::choose_parameter(parameters::get_parameter(np, internal_np::rng), nullptr))
  {}
///@}

  template<typename CGAL_NP_TEMPLATE_PARAMETERS_NO_DEFAULT>
  Labeled_mesh_domain_3(const CGAL_NP_CLASS& np)
  :Impl_details(parameters::get_parameter(np, internal_np::function_param),
                parameters::get_parameter(np, internal_np::bounding_object_param),
                parameters::choose_parameter(parameters::get_parameter(np, internal_np::error_bound), FT(1e-3)),
                parameters::choose_parameter(parameters::get_parameter(np, internal_np::surface_patch_index), construct_pair_functor()),
                parameters::choose_parameter(parameters::get_parameter(np, internal_np::null_subdomain_index_param), Null_subdomain_index()),
                parameters::choose_parameter(parameters::get_parameter(np, internal_np::rng), nullptr))
  {}

  // Overload handling parameters passed with operator=
  template<typename CGAL_NP_TEMPLATE_PARAMETERS_NO_DEFAULT_1,
           typename CGAL_NP_TEMPLATE_PARAMETERS_NO_DEFAULT_2,
           typename ... NP>
  Labeled_mesh_domain_3(const CGAL_NP_CLASS_1&  np1,
                        const CGAL_NP_CLASS_2&  np2,
                        const NP& ... nps)
    : Labeled_mesh_domain_3(internal_np::combine_named_parameters(np1, np2, nps...))
  {}


#ifndef CGAL_NO_DEPRECATED_CODE
  template<typename Function, typename Bounding_object>
#if !defined(BOOST_MSVC)
  CGAL_DEPRECATED
#endif // BOOST_MSVC
  Labeled_mesh_domain_3(const Function& function,
                        const Bounding_object& bounding_object,
                        double error_bound,
                        typename std::enable_if<!is_named_function_parameter<Function>>::type* = nullptr)
  : Labeled_mesh_domain_3(function,
                          bounding_object,
                          parameters::relative_error_bound(error_bound))
  {}
#endif // CGAL_NO_DEPRECATED_CODE

  template<typename CGAL_NP_TEMPLATE_PARAMETERS>
  static Labeled_mesh_domain_3 create_gray_image_mesh_domain(const CGAL::Image_3& image_, const CGAL_NP_CLASS& np = parameters::default_values());

  template<typename CGAL_NP_TEMPLATE_PARAMETERS>
  static auto
  create_labeled_image_mesh_domain(const CGAL::Image_3& image_, const CGAL_NP_CLASS& np = parameters::default_values());
/// @}

  template<typename CGAL_NP_TEMPLATE_PARAMETERS_NO_DEFAULT>
  static Labeled_mesh_domain_3 create_gray_image_mesh_domain(const CGAL_NP_CLASS& np);

  // Overload handling parameters passed with operator=
  template<typename CGAL_NP_TEMPLATE_PARAMETERS_NO_DEFAULT_1,
           typename CGAL_NP_TEMPLATE_PARAMETERS_NO_DEFAULT_2,
           typename ... NP>
  static Labeled_mesh_domain_3 create_gray_image_mesh_domain(const CGAL::Image_3& image_,
                                                             const CGAL_NP_CLASS_1&  np1,
                                                             const CGAL_NP_CLASS_2&  np2,
                                                             const NP& ... nps);

  // Overload handling parameters passed with operator=
  template<typename CGAL_NP_TEMPLATE_PARAMETERS_NO_DEFAULT_1,
           typename CGAL_NP_TEMPLATE_PARAMETERS_NO_DEFAULT_2,
           typename ... NP>
  static Labeled_mesh_domain_3 create_gray_image_mesh_domain(const CGAL_NP_CLASS_1&  np1,
                                                             const CGAL_NP_CLASS_2&  np2,
                                                             const NP& ... nps);

  template<typename CGAL_NP_TEMPLATE_PARAMETERS_NO_DEFAULT>
  static auto create_labeled_image_mesh_domain(const CGAL_NP_CLASS& np);

  // Overload handling parameters passed with operator=
  template<typename CGAL_NP_TEMPLATE_PARAMETERS_NO_DEFAULT_1,
           typename CGAL_NP_TEMPLATE_PARAMETERS_NO_DEFAULT_2,
           typename ... NP>
  static auto create_labeled_image_mesh_domain(const CGAL::Image_3& image_,
                                               const CGAL_NP_CLASS_1&  np1,
                                               const CGAL_NP_CLASS_2&  np2,
                                               const NP& ... nps);

  // Overload handling parameters passed with operator=
  template<typename CGAL_NP_TEMPLATE_PARAMETERS_NO_DEFAULT_1,
           typename CGAL_NP_TEMPLATE_PARAMETERS_NO_DEFAULT_2,
           typename ... NP>
  static auto create_labeled_image_mesh_domain(const CGAL_NP_CLASS_1& np1,
                                               const CGAL_NP_CLASS_2& np2,
                                               const NP& ... nps);
  template<typename Function, typename Bounding_object, typename CGAL_NP_TEMPLATE_PARAMETERS>
  static Labeled_mesh_domain_3 create_implicit_mesh_domain(const Function& function,
                                                           const Bounding_object& bounding_object,
                                                           const CGAL_NP_CLASS& np = parameters::default_values(),
                                                           typename std::enable_if<!is_named_function_parameter<Function>>::type* = nullptr)
  {
    using parameters::get_parameter;
    using parameters::choose_parameter;
    FT relative_error_bound_ = choose_parameter(get_parameter(np, internal_np::error_bound), FT(1e-3));
    CGAL::Random* p_rng_ = choose_parameter(get_parameter(np, internal_np::rng), nullptr);
    auto null_subdomain_index_ = choose_parameter(get_parameter(np, internal_np::null_subdomain_index_param), Null_functor());
    auto construct_surface_patch_index_ = choose_parameter(get_parameter(np, internal_np::surface_patch_index), Null_functor());
    namespace p = CGAL::parameters;
    return Labeled_mesh_domain_3
            (p::function = make_implicit_to_labeling_function_wrapper<BGT>(function),
             p::bounding_object = bounding_object,
             p::relative_error_bound = relative_error_bound_,
             p::p_rng = p_rng_,
             p::null_subdomain_index =
                     create_null_subdomain_index(null_subdomain_index_),
             p::construct_surface_patch_index =
                     create_construct_surface_patch_index(construct_surface_patch_index_));
  }
/// @}

  template<typename CGAL_NP_TEMPLATE_PARAMETERS>
  static Labeled_mesh_domain_3 create_implicit_mesh_domain(const CGAL_NP_CLASS &np)
  {
    static_assert(!parameters::is_default_parameter<CGAL_NP_CLASS, internal_np::function_param_t>::value, "Value for required parameter not found");
    static_assert(!parameters::is_default_parameter<CGAL_NP_CLASS, internal_np::bounding_object_param_t>::value, "Value for required parameter not found");

    return create_implicit_mesh_domain(parameters::get_parameter(np, internal_np::function_param),
                                       parameters::get_parameter(np, internal_np::bounding_object_param),
                                       np);
  }

  // Overload handling parameters passed with operator=
  template<typename CGAL_NP_TEMPLATE_PARAMETERS_NO_DEFAULT_1,
           typename CGAL_NP_TEMPLATE_PARAMETERS_NO_DEFAULT_2,
           typename ... NP>
  static Labeled_mesh_domain_3 create_implicit_mesh_domain(const CGAL_NP_CLASS_1&  np1,
                                                           const CGAL_NP_CLASS_2&  np2,
                                                           const NP& ... nps)
  {
    return create_implicit_mesh_domain(internal_np::combine_named_parameters(np1, np2, nps...));
  }


#ifndef CGAL_NO_DEPRECATED_CODE
  template<typename SubdomainIndex = Null_functor,
           typename NullSubdomainIndex = Null_functor,
           typename ConstructSurfacePatchIndex = Null_functor>
  CGAL_DEPRECATED
  static Labeled_mesh_domain_3
  create_gray_image_mesh_domain(const CGAL::Image_3& image_,
                                double iso_value,
                                double value_outside=0,
                                double relative_error_bound = 1e-3,
                                CGAL::Random* rng = nullptr,
                                SubdomainIndex image_values_to_subdom_indices = SubdomainIndex(),
                                NullSubdomainIndex null_subdomain_index_ = NullSubdomainIndex(),
                                ConstructSurfacePatchIndex construct_surface_patch_index_ = ConstructSurfacePatchIndex());

  template<typename SubdomainIndex = Null_functor,
           typename NullSubdomainIndex = Null_functor,
           typename ConstructSurfacePatchIndex = Null_functor>
  CGAL_DEPRECATED
  static Labeled_mesh_domain_3
  create_labeled_image_mesh_domain(const CGAL::Image_3& image_,
                                   double relative_error_bound,
                                   const CGAL::Image_3& weights_,
                                   int value_outside=0,
                                   CGAL::Random* rng = nullptr,
                                   SubdomainIndex image_values_to_subdom_indices = SubdomainIndex(),
                                   NullSubdomainIndex null_subdomain_index_ = NullSubdomainIndex(),
                                   ConstructSurfacePatchIndex construct_surface_patch_index_ = ConstructSurfacePatchIndex());
#endif


  /*
   * Constructs  a set of `n` points on the surface, and output them to
   *  the output iterator `pts` whose value type is required to be
   *  `std::pair<Points_3, Index>`.
   */
  struct Construct_initial_points
  {
    Construct_initial_points(const Labeled_mesh_domain_3& domain)
      : r_domain_(domain) {}

    template<class OutputIterator>
    OutputIterator operator()(OutputIterator pts, const int n = 12) const;

  private:
    const Labeled_mesh_domain_3& r_domain_;
  };

  // Returns Construct_initial_points object
  Construct_initial_points construct_initial_points_object() const
  {
    return Construct_initial_points(*this);
  }

  /*
   * Returns a bounding box of the domain
   */
  Bbox_3 bbox() const {
    return this->bbox_.bbox();
  }

  /*
   * Returns true if point `p` is in the domain. If `p` is in the
   *  domain, the parameter index is set to the index of the subdomain
   *  including $p$. It is set to the default value otherwise.
   */
  struct Is_in_domain
  {
    Is_in_domain(const Labeled_mesh_domain_3& domain) : r_domain_(domain) {}

    Subdomain operator()(const Point_3& p) const
    {
      // null(f(p)) means p is outside the domain
      Subdomain_index index = (r_domain_.function_)(p);
      if ( r_domain_.null(index) )
        return Subdomain{};
      else
        return Subdomain{ index };
    }
  private:
    const Labeled_mesh_domain_3& r_domain_;
  };

  // Returns Is_in_domain object
  Is_in_domain is_in_domain_object() const { return Is_in_domain(*this); }

  /*
   * Returns `true` if the element `type` intersect properly any of the
   * surface patches describing the either the domain boundary or some
   * subdomain boundary.
   * `Type` is either `Segment_3`, `Ray_3` or `Line_3`.
   * Parameter index is set to the index of the intersected surface patch
   * if `true` is returned and to the default `Surface_patch_index`
   * value otherwise.
   */
  struct Do_intersect_surface
  {
    Do_intersect_surface(const Labeled_mesh_domain_3& domain)
      : r_domain_(domain) {}

    Surface_patch operator()(const Segment_3& s) const
    {
      return this->operator()(s.source(), s.target());
    }

    Surface_patch operator()(const Ray_3& r) const
    {
      return clip_to_segment(r);
    }

    Surface_patch operator()(const Line_3& l) const
    {
      return clip_to_segment(l);
    }

  private:
    // Returns true if points `a` and `b` do not belong to the same subdomain
    // `index` is set to the surface index of subdomains f(a), f(b)
    Surface_patch operator()(const Point_3& a, const Point_3& b) const
    {
      // If f(a) != f(b), then [a,b] intersects some surface. Here we consider
      // [a,b] intersects surface_patch labeled <f(a),f(b)> (or <f(b),f(a)>).
      // It may be false, further rafinement will improve precision
      const Subdomain_index value_a = r_domain_.function_(a);
      const Subdomain_index value_b = r_domain_.function_(b);

      if ( value_a != value_b ) {
        if( r_domain_.null(value_a) && r_domain_.null(value_b) )
          return Surface_patch();
        else
          return Surface_patch(r_domain_.make_surface_index(value_a, value_b));
      }
      else
        return Surface_patch();
    }

    /*
     * Clips  `query` to a segment `s`, and call `operator()(s)`
     */
    template<typename Query>
    Surface_patch clip_to_segment(const Query& query) const
    {
      const auto clipped = CGAL::intersection(query, r_domain_.bbox_);
      if(clipped)
        if(const Segment_3* s = std::get_if<Segment_3>(&*clipped))
          return this->operator()(*s);

      return Surface_patch();
    }

  private:
    const Labeled_mesh_domain_3& r_domain_;
  };

  // Returns Do_intersect_surface object
  Do_intersect_surface do_intersect_surface_object() const
  {
    return Do_intersect_surface(*this);
  }

  /*
   * Returns a point in the intersection of the primitive `type`
   * with some boundary surface.
   * `Type` is either `Segment_3`, `Ray_3` or `Line_3`.
   */
  struct Construct_intersection
  {
    Construct_intersection(const Labeled_mesh_domain_3& domain)
      : r_domain_(domain) {}

    Intersection operator()(const Segment_3& s) const
    {
#ifndef CGAL_MESH_3_NO_LONGER_CALLS_DO_INTERSECT_3
      CGAL_precondition(r_domain_.do_intersect_surface_object()(s) != std::nullopt);
#endif // NOT CGAL_MESH_3_NO_LONGER_CALLS_DO_INTERSECT_3
      return this->operator()(s.source(),s.target());
    }

    Intersection operator()(const Ray_3& r) const
    {
      return clip_to_segment(r);
    }

    Intersection operator()(const Line_3& l) const
    {
      return clip_to_segment(l);
    }

  private:
    /*
     * Returns a point in the intersection of `[a,b]` with the surface
     *  `a` must be the source point, and `b` the out point. It is important
     * because it drives bisection cuts.
     * Indeed, the returned point is the first intersection of `[a,b]`
     * with a subdomain surface.
     */
    Intersection operator()(const Point_3& a, const Point_3& b) const
    {
      // Functors
      typename BGT::Compute_squared_distance_3 squared_distance =
                                      BGT().compute_squared_distance_3_object();
      typename BGT::Construct_midpoint_3 midpoint =
                                      BGT().construct_midpoint_3_object();

      // Non const points
      Point_3 p1 = a;
      Point_3 p2 = b;
      Point_3 mid = midpoint(p1, p2);

      // Cannot be const: those values are modified below.
      Subdomain_index value_at_p1 = r_domain_.function_(p1);
      Subdomain_index value_at_p2 = r_domain_.function_(p2);
      Subdomain_index value_at_mid = r_domain_.function_(mid);

      // If both extremities are in the same subdomain,
      // there is no intersection.
      // Should only be able to happen during initial point generation.
      if( value_at_p1 == value_at_p2 )
      {
        return Intersection();
      }
      if( r_domain_.null(value_at_p1) && r_domain_.null(value_at_p2) ) {
        return Intersection();
      }

      // Else lets find a point (by bisection)
      // Bisection ends when the point is near than error bound from surface
      while(true)
      {
        // If the two points are enough close, then we return midpoint
        if ( squared_distance(p1, p2) < r_domain_.squared_error_bound_ )
        {
          CGAL_assertion(value_at_p1 != value_at_p2 &&
             ! ( r_domain_.null(value_at_p1) && r_domain_.null(value_at_p2) ) );
          const Surface_patch_index sp_index =
            r_domain_.make_surface_index(value_at_p1, value_at_p2);
          const Index index = r_domain_.index_from_surface_patch_index(sp_index);
          return Intersection(mid, index, 2);
        }

        // Else we must go on
        // Here we consider that p1(a) is the source point. Thus, we keep p1 and
        // change p2 if f(p1)!=f(p2).
        // That allows us to find the first intersection from a of [a,b] with
        // a surface.
        if ( value_at_p1 != value_at_mid &&
             ! ( r_domain_.null(value_at_p1) && r_domain_.null(value_at_mid) ) )
        {
          p2 = mid;
          value_at_p2 = value_at_mid;
        }
        else
        {
          p1 = mid;
          value_at_p1 = value_at_mid;
        }

        mid = midpoint(p1, p2);
        value_at_mid = r_domain_.function_(mid);
      }
    }

    // Clips  `query` to a segment `s`, and call `operator()(s)`
    template<typename Query>
    Intersection clip_to_segment(const Query& query) const
    {
      const auto clipped = CGAL::intersection(query, r_domain_.bbox_);
      if(clipped)
        if(const Segment_3* s = std::get_if<Segment_3>(&*clipped))
          return this->operator()(*s);

      return Intersection();
    }

  private:
    const Labeled_mesh_domain_3& r_domain_;
  };

  // Returns Construct_intersection object
  Construct_intersection construct_intersection_object() const
  {
    return Construct_intersection(*this);
  }

  /*
   * Returns the index to be stored in a vertex lying on the surface identified
   * by `index`.
   */
  Index index_from_surface_patch_index(const Surface_patch_index& index) const
  { return Index(index); }

  /*
   * Returns the index to be stored in a vertex lying in the subdomain
   * identified by `index`.
   */
  Index index_from_subdomain_index(const Subdomain_index& index) const
  { return Index(index); }

  /*
   * Returns the `Surface_patch_index` of the surface patch
   * where lies a vertex with dimension 2 and index `index`.
   */
  Surface_patch_index surface_patch_index(const Index& index) const
  { return Mesh_3::internal::get_index<Surface_patch_index>(index); }

  /*
   * Returns the index of the subdomain containing a vertex
   *  with dimension 3 and index `index`.
   */
  Subdomain_index subdomain_index(const Index& index) const
  { return Mesh_3::internal::get_index<Subdomain_index>(index); }

  // -----------------------------------
  // Backward Compatibility
  // -----------------------------------
#ifndef CGAL_MESH_3_NO_DEPRECATED_SURFACE_INDEX
  typedef Surface_patch_index   Surface_index;

  Index index_from_surface_index(const Surface_index& index) const
  { return index_from_surface_patch_index(index); }

  Surface_index surface_index(const Index& index) const
  { return surface_patch_index(index); }
#endif // CGAL_MESH_3_NO_DEPRECATED_SURFACE_INDEX
  // -----------------------------------
  // End backward Compatibility
  // -----------------------------------

protected:
  // Returns Surface_patch_index from `i` and `j`
  Surface_patch_index make_surface_index(const Subdomain_index i,
                                         const Subdomain_index j) const
  {
    if(i < j)
      return this->cstr_s_p_index(i, j);
    else
      return this->cstr_s_p_index(j, i);
  }

  // Returns the bounding sphere of an Iso_cuboid_3
  Sphere_3 bounding_sphere(const Iso_cuboid_3& bbox) const
  {
    typename BGT::Construct_sphere_3 sphere = BGT().construct_sphere_3_object();
    return sphere((bbox.min)(), (bbox.max)());
  }

  template <typename Image_word_type,
            typename FT_, typename FT2, typename Functor>
  static
  Function_type
  create_gray_image_wrapper_with_known_word_type
  (const CGAL::Image_3& image,
   const FT_& iso_value,
   const Functor& image_values_to_subdomain_indices,
   const FT2& value_outside);

  template <typename FT_, typename FT2, typename Functor>
  static
  Function_type
  create_gray_image_wrapper(const CGAL::Image_3& image,
                            const FT_& iso_value,
                            const Functor& image_values_to_subdomain_indices,
                            const FT2& value_outside);

  template <typename Image_word_type,
            typename FT_, typename Functor>
  static
  Function_type
  create_labeled_image_wrapper_with_known_word_type
  (const CGAL::Image_3& image,
   const Functor& image_values_to_subdomain_indices,
   const FT_& value_outside);

  template <typename Image_word_type,
            typename FT, typename Functor>
  static
  Function_type
  create_weighted_labeled_image_wrapper_with_know_word_type
  (const CGAL::Image_3& image,
   const CGAL::Image_3& weights,
   const Functor& image_values_to_subdomain_indices,
   const FT& value_outside);

  template <typename FT_, typename Functor>
  static
  Function_type
  create_labeled_image_wrapper(const CGAL::Image_3& image,
                               const Functor& image_values_to_subdomain_indices,
                               const FT_& value_outside);

  template <typename FT_, typename Functor>
  static
  Function_type
  create_weighted_labeled_image_wrapper(const CGAL::Image_3& image,
                                        const CGAL::Image_3& weights,
                                        const Functor& image_values_to_subdomain_indices,
                                        const FT_& value_outside);

  static
  Construct_surface_patch_index
  create_construct_surface_patch_index(const Null_functor&) {
    return Impl_details::construct_pair_functor();
  }

  template <typename Functor>
  static
  Construct_surface_patch_index
  create_construct_surface_patch_index(const Functor& functor) {
    return functor;
  }

  static Null create_null_subdomain_index(const Null_functor&) {
    return Null_subdomain_index();
  }

  template <typename Functor>
  static Null create_null_subdomain_index(const Functor& functor) {
    return functor;
  }

public:
  // Returns bounding box
  const Iso_cuboid_3& bounding_box() const { return this->bbox_; }

};  // end class Labeled_mesh_domain_3

//-------------------------------------------------------
// Method implementation
//-------------------------------------------------------
template<class BGT, class Subdomain_index, class Surface_patch_index>
template<class OutputIterator>
OutputIterator
Labeled_mesh_domain_3<BGT, Subdomain_index, Surface_patch_index>::
Construct_initial_points::operator()(OutputIterator pts,
                                     const int nb_points) const
{
  // Create point_iterator on and in bounding_sphere
  typedef Random_points_on_sphere_3<Point_3> Random_points_on_sphere_3;
  typedef Random_points_in_sphere_3<Point_3> Random_points_in_sphere_3;

  const FT squared_radius = BGT().compute_squared_radius_3_object()(
      r_domain_.bounding_sphere(r_domain_.bbox_));

  const double radius = std::sqrt(CGAL::to_double(squared_radius));

  CGAL::Random& rng = *(r_domain_.p_rng_);
  Random_points_on_sphere_3 random_point_on_sphere(radius, rng);
  Random_points_in_sphere_3 random_point_in_sphere(radius, rng);

  // Get some functors
  typename BGT::Construct_segment_3 segment_3 =
                              BGT().construct_segment_3_object();
  typename BGT::Construct_vector_3 vector_3 =
                              BGT().construct_vector_3_object();
  typename BGT::Construct_translated_point_3 translate =
                              BGT().construct_translated_point_3_object();
  typename BGT::Construct_center_3 center = BGT().construct_center_3_object();

  // Get translation from origin to sphere center
  Point_3 center_pt = center(r_domain_.bounding_sphere(r_domain_.bbox_));
  const Vector_3 sphere_translation = vector_3(CGAL::ORIGIN, center_pt);

  // Create nb_point points
  int n = nb_points;
#ifdef CGAL_MESH_3_VERBOSE
  std::cerr << "construct initial points (nb_points: " << nb_points << ")\n";
#endif
  while ( 0 != n )
  {
    // Get a random segment
    const Point_3 random_point = translate(*random_point_on_sphere,
                                           sphere_translation);
    const Segment_3 random_seg = segment_3(center_pt, random_point);

    // Add the intersection to the output if it exists
    Surface_patch surface = r_domain_.do_intersect_surface_object()(random_seg);
    if ( surface )
    {
      const Point_3 intersect_pt = std::get<0>(
          r_domain_.construct_intersection_object()(random_seg));
      *pts++ = std::make_pair(intersect_pt,
                              r_domain_.index_from_surface_patch_index(*surface));
      --n;

#ifdef CGAL_MESH_3_VERBOSE
      std::cerr << boost::format("\r             \r"
                                 "%1%/%2% initial point(s) found...")
                   % (nb_points - n)
                   % nb_points;
#endif
    }
    else
    {
      // Get a new random point into sphere as center of object
      // It may be necessary if the center of the domain is empty, e.g., torus
      // In general case, it is good for input point dispersion
      ++random_point_in_sphere;
      center_pt = translate(*random_point_in_sphere, sphere_translation);
    }
    ++random_point_on_sphere;
  }

#ifdef CGAL_MESH_3_VERBOSE
  std::cerr << "\n";
#endif
  return pts;
}

}  // end namespace CGAL

#include <CGAL/enable_warnings.h>

#endif // CGAL_LABELED_MESH_DOMAIN_3_IMPLICIT_FUNCTION_H
